Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00467.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:1007 original size:29 final size:28

Alignment explanation


    Indices: 970--1036  Score: 75
    Period size: 28  Copynumber: 2.4  Consensus size: 28

        960 ACTTAATAGG

                                   *      
        970 GTTT-AGGTTTAG-GATTTAGGATTTTAAA
          1 GTTTAAGGTTTAGAG-TTTA-GAATTTAAA

                                        
        998 GTTTAAGGTTTAGAGTTTAGAATTTAAA
          1 GTTTAAGGTTTAGAGTTTAGAATTTAAA

            *    *     
       1026 ATTTAGGGTTT
          1 GTTTAAGGTTT

       1037 GGGGTTTGAA


Statistics
Matches: 34,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
  28   21  0.62
  29   12  0.35
  30    1  0.03

ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46


Consensus pattern (28 bp):   
GTTTAAGGTTTAGAGTTTAGAATTTAAA
Done.