Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00481.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 399

Length: 666
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30


Found at i:290 original size:51 final size:51

Alignment explanation


    Indices: 183--295  Score: 138
    Period size: 51  Copynumber: 2.2  Consensus size: 51

        173 CATCTGTAGG

                  *   *        *                            *  
        183 TTATCCTCAACCCCCGGTAGTGTCACCCGTGGTGGCATATCCGGATCCGCA
          1 TTATCCACAAGCCCCGGTACTGTCACCCGTGGTGGCATATCCGGATCCACA

            *     *                     *                     * 
        234 CTATCCCCAAGCCCCGGTAACT-TCACCTGTGGTGGCATATCCGGATCCATA
          1 TTATCCACAAGCCCCGGT-ACTGTCACCCGTGGTGGCATATCCGGATCCACA

                       
        285 TTATCCACAAG
          1 TTATCCACAAG

        296 TAAGCACCTT


Statistics
Matches: 52,  Mismatches: 9, Indels: 2
        0.83            0.14        0.03

Matches are distributed among these distances:
  51   50  0.96
  52    2  0.04

ACGTcount: A:0.21, C:0.35, G:0.20, T:0.24


Consensus pattern (51 bp):   
TTATCCACAAGCCCCGGTACTGTCACCCGTGGTGGCATATCCGGATCCACA
Done.