Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00483.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22


Found at i:50 original size:20 final size:20

Alignment explanation


    Indices: 25--63  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

         15 AGCAGAATAC

                                
         25 AAAAGAAAACCAAAAAACAG
          1 AAAAGAAAACCAAAAAACAG

                     *  *      
         45 AAAAGAAAAGCAGAAAACA
          1 AAAAGAAAACCAAAAAACA

         64 AGCAGCTGAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.74, C:0.13, G:0.13, T:0.00


Consensus pattern (20 bp):   
AAAAGAAAACCAAAAAACAG
Done.