Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00487.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6212
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Found at i:4313 original size:152 final size:152
Alignment explanation
Indices: 4037--4344 Score: 607
Period size: 152 Copynumber: 2.0 Consensus size: 152
4027 GGGGACCTGC
4037 CAGAGTATAATCAGGTTTGGACTTCAATTCATTTTATTATAATTTCTTTTTTGGAGTAGCTTTTG
1 CAGAGTATAATCAGGTTTGGACTTCAATTCATTTTATTATAATTTCTTTTTTGGAGTAGCTTTTG
4102 TTGAAATGTGTAATGTATAATAGTGGTTTGTTAATGGGACTAAATTCTGTCTTTACATAATTGTT
66 TTGAAATGTGTAATGTATAATAGTGGTTTGTTAATGGGACTAAATTCTGTCTTTACATAATTGTT
4167 ATGTTTTCAGCCTTTTGTTTAT
131 ATGTTTTCAGCCTTTTGTTTAT
4189 CAGAGTATAATCAGGTTTGGACTTCAATTCATTTTATTATAATTTCTTTTTTGGAGTAGCTTTTG
1 CAGAGTATAATCAGGTTTGGACTTCAATTCATTTTATTATAATTTCTTTTTTGGAGTAGCTTTTG
*
4254 TTGAAATGTGTAATGTATAATAGTGGTTTGTTAATGGGACTAAATTCTGTCTTTTCATAATTGTT
66 TTGAAATGTGTAATGTATAATAGTGGTTTGTTAATGGGACTAAATTCTGTCTTTACATAATTGTT
4319 ATGTTTTCAGCCTTTTGTTTAT
131 ATGTTTTCAGCCTTTTGTTTAT
4341 CAGA
1 CAGA
4345 TGTGGCCGAA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 155 1.00
ACGTcount: A:0.25, C:0.09, G:0.18, T:0.48
Consensus pattern (152 bp):
CAGAGTATAATCAGGTTTGGACTTCAATTCATTTTATTATAATTTCTTTTTTGGAGTAGCTTTTG
TTGAAATGTGTAATGTATAATAGTGGTTTGTTAATGGGACTAAATTCTGTCTTTACATAATTGTT
ATGTTTTCAGCCTTTTGTTTAT
Done.