Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02407.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33


Found at i:1448 original size:47 final size:47

Alignment explanation


    Indices: 1391--1485  Score: 190
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1381 AAGAAAAAAG

                                                           
       1391 AAAGTTAAAAATTGGGAACAGAATCAAATTAAATCTTTTATTATTAA
          1 AAAGTTAAAAATTGGGAACAGAATCAAATTAAATCTTTTATTATTAA

                                                           
       1438 AAAGTTAAAAATTGGGAACAGAATCAAATTAAATCTTTTATTATTAA
          1 AAAGTTAAAAATTGGGAACAGAATCAAATTAAATCTTTTATTATTAA

             
       1485 A
          1 A

       1486 TAGGCCTATT


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   48  1.00

ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34


Consensus pattern (47 bp):   
AAAGTTAAAAATTGGGAACAGAATCAAATTAAATCTTTTATTATTAA
Done.