Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00495.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2466
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34


Found at i:2339 original size:10 final size:10

Alignment explanation


    Indices: 2310--2350  Score: 55
    Period size: 10  Copynumber: 3.8  Consensus size: 10

       2300 TTGCATAGTG

                      
       2310 ATATGTATAT
          1 ATATGTATAT

                         
       2320 CATGTATGTATAT
          1 -A--TATGTATAT

                      
       2333 ATATGTATAT
          1 ATATGTATAT

                    
       2343 ATATGTAT
          1 ATATGTAT

       2351 GGAGAGATGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  10   17  0.61
  11    1  0.04
  12    1  0.04
  13    9  0.32

ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49


Consensus pattern (10 bp):   
ATATGTATAT
Done.