Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00500.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33


Found at i:117 original size:5 final size:5

Alignment explanation


    Indices: 107--139  Score: 50
    Period size: 5  Copynumber: 6.8  Consensus size: 5

         97 TTTATGTATA

                                       *            
        107 TATGG TATGG TATGG TATGG TATAG TAT-G TATG
          1 TATGG TATGG TATGG TATGG TATGG TATGG TATG

        140 TAGCCTATTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
   4    4  0.15
   5   22  0.85

ACGTcount: A:0.24, C:0.00, G:0.33, T:0.42


Consensus pattern (5 bp):   
TATGG

Done.