Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02410.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28


Found at i:535 original size:30 final size:30

Alignment explanation


    Indices: 499--558  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        489 TTCATTAGAG

                                          
        499 GATAATTCGAGTACACCAACAGAGAATTGT
          1 GATAATTCGAGTACACCAACAGAGAATTGT

                                          
        529 GATAATTCGAGTACACCAACAGAGAATTGT
          1 GATAATTCGAGTACACCAACAGAGAATTGT

        559 TCTAGTTCTG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23


Consensus pattern (30 bp):   
GATAATTCGAGTACACCAACAGAGAATTGT
Done.