Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00507.N11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2433
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37


Found at i:49 original size:18 final size:18

Alignment explanation


    Indices: 26--82  Score: 80
    Period size: 18  Copynumber: 3.2  Consensus size: 18

         16 GAAATTGACA

                               
         26 CTTCTTC-TCCCCTTTCCC
          1 CTTCTTCTTCCCC-TTCCC

                              
         44 CTTCTTCTTCCCCTTCCC
          1 CTTCTTCTTCCCCTTCCC

                **            
         62 CTTCCCCTTCCCCTTCCC
          1 CTTCTTCTTCCCCTTCCC

               
         80 CTT
          1 CTT

         83 TTGAAATCGG


Statistics
Matches: 36,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   31  0.86
  19    5  0.14

ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42


Consensus pattern (18 bp):   
CTTCTTCTTCCCCTTCCC

Found at i:59 original size:6 final size:6

Alignment explanation


    Indices: 33--82  Score: 73
    Period size: 6  Copynumber: 8.2  Consensus size: 6

         23 ACACTTCTTC

                             **                                     
         33 TCCCCTT TCCCCT TCTTCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT
          1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT

             
         82 T
          1 T

         83 TTGAAATCGG


Statistics
Matches: 39,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
   6   34  0.87
   7    5  0.13

ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40


Consensus pattern (6 bp):   
TCCCCT

Found at i:951 original size:18 final size:18

Alignment explanation


    Indices: 914--949  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        904 TGTTTCCTTT

                    *         
        914 GAGGTCCATGATAATTGG
          1 GAGGTCCAAGATAATTGG

                              
        932 GAGGTCCAAG-TAATTGG
          1 GAGGTCCAAGATAATTGG

             
        949 G
          1 G

        950 GATTCCATAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.28, C:0.11, G:0.36, T:0.25


Consensus pattern (18 bp):   
GAGGTCCAAGATAATTGG
Done.