Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00542.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:22 original size:13 final size:13

Alignment explanation


    Indices: 4--34  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

          1 AAG

                         
          4 CTCAATATTCAAC
          1 CTCAATATTCAAC

                         
         17 CTCAATATTCAAC
          1 CTCAATATTCAAC

                 
         30 CTCAA
          1 CTCAA

         35 GAAGAAAGCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29


Consensus pattern (13 bp):   
CTCAATATTCAAC
Done.