Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00550.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6244
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33


Found at i:3464 original size:25 final size:25

Alignment explanation


    Indices: 3436--3485  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       3426 TAACAAAAAA

                                     
       3436 TATTTCTTGCTTAGCCTAGTTTAAC
          1 TATTTCTTGCTTAGCCTAGTTTAAC

                                     
       3461 TATTTCTTGCTTAGCCTAGTTTAAC
          1 TATTTCTTGCTTAGCCTAGTTTAAC

       3486 CCGTCTAACT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48


Consensus pattern (25 bp):   
TATTTCTTGCTTAGCCTAGTTTAAC
Done.