Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00551.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4737
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:4472 original size:12 final size:12

Alignment explanation


    Indices: 4452--4483  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       4442 TGGAACCTGC

                *       
       4452 TAGTGCCTACCA
          1 TAGTACCTACCA

                        
       4464 TAGTACCTACCA
          1 TAGTACCTACCA

                    
       4476 TAGTACCT
          1 TAGTACCT

       4484 TGTAGGTAAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.28, C:0.31, G:0.12, T:0.28


Consensus pattern (12 bp):   
TAGTACCTACCA
Done.