Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00554.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 971

Length: 1619
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31


Found at i:1066 original size:121 final size:121

Alignment explanation


    Indices: 852--1096  Score: 418
    Period size: 121  Copynumber: 2.0  Consensus size: 121

        842 CAACATCGAA

                 *                     *                                     
        852 CATGGTGGACTTGAGGTTCTTCACTAGCCTTGAAATCAGTCTAGGGGAACCTGATATTACACGCG
          1 CATGGCGGACTTGAGGTTCTTCACTAGACTTGAAATCAGTCTAGGGGAACCTGATATTACACGCG

                              *                                     
        917 TCTTGGAATCTGCTAAAACTATATTACAGTCCACTCGACACTGAAGCTGAGTTTAG
         66 TCTTGGAATCTGCTAAAAATATATTACAGTCCACTCGACACTGAAGCTGAGTTTAG

                                                      *      *         *   * 
        973 CATGGCGGACTTGAGGTTCTTCACTAGACTTGAAATCAGTCTTGGGGAAGCTGATATTATACGTG
          1 CATGGCGGACTTGAGGTTCTTCACTAGACTTGAAATCAGTCTAGGGGAACCTGATATTACACGCG

                                                            *       
       1038 TCTTGGAATCTGCTAAAAATATATTACAGTCCACTCGACACTGAAGCTTAGTTTAG
         66 TCTTGGAATCTGCTAAAAATATATTACAGTCCACTCGACACTGAAGCTGAGTTTAG

               
       1094 CAT
          1 CAT

       1097 TGTTGTTCCG


Statistics
Matches: 116,  Mismatches: 8, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 121  116  1.00

ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Consensus pattern (121 bp):   
CATGGCGGACTTGAGGTTCTTCACTAGACTTGAAATCAGTCTAGGGGAACCTGATATTACACGCG
TCTTGGAATCTGCTAAAAATATATTACAGTCCACTCGACACTGAAGCTGAGTTTAG
Done.