Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02416.F10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4144
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31


Found at i:2691 original size:12 final size:13

Alignment explanation


    Indices: 2663--2693  Score: 53
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       2653 TGTTTATATG

                *        
       2663 TTTTGAAATTACT
          1 TTTTCAAATTACT

                         
       2676 TTTTCAAATTACT
          1 TTTTCAAATTACT

                 
       2689 TTTTC
          1 TTTTC

       2694 TAACATATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   17  1.00

ACGTcount: A:0.26, C:0.13, G:0.03, T:0.58


Consensus pattern (13 bp):   
TTTTCAAATTACT
Done.