Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00567.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4605
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Found at i:1876 original size:167 final size:167
Alignment explanation
Indices: 1600--1936 Score: 674
Period size: 167 Copynumber: 2.0 Consensus size: 167
1590 TCTAGCACAA
1600 ATGGATTTTGTTTTAAGCATTATTTGCTGTTTAACCATTAGTGAAGTCAAAAGCATGATTGAAAA
1 ATGGATTTTGTTTTAAGCATTATTTGCTGTTTAACCATTAGTGAAGTCAAAAGCATGATTGAAAA
1665 TTATTAATAACATAAACCAGGAGCCCATAATTGCAGAAGCTTAGCCTTTAAGCTCAGATATATCT
66 TTATTAATAACATAAACCAGGAGCCCATAATTGCAGAAGCTTAGCCTTTAAGCTCAGATATATCT
1730 TCCGTACTTTCCATTAGAAGAATAAGAATCATCTGAC
131 TCCGTACTTTCCATTAGAAGAATAAGAATCATCTGAC
1767 ATGGATTTTGTTTTAAGCATTATTTGCTGTTTAACCATTAGTGAAGTCAAAAGCATGATTGAAAA
1 ATGGATTTTGTTTTAAGCATTATTTGCTGTTTAACCATTAGTGAAGTCAAAAGCATGATTGAAAA
1832 TTATTAATAACATAAACCAGGAGCCCATAATTGCAGAAGCTTAGCCTTTAAGCTCAGATATATCT
66 TTATTAATAACATAAACCAGGAGCCCATAATTGCAGAAGCTTAGCCTTTAAGCTCAGATATATCT
1897 TCCGTACTTTCCATTAGAAGAATAAGAATCATCTGAC
131 TCCGTACTTTCCATTAGAAGAATAAGAATCATCTGAC
1934 ATG
1 ATG
1937 ATCCTTGTTG
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 170 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (167 bp):
ATGGATTTTGTTTTAAGCATTATTTGCTGTTTAACCATTAGTGAAGTCAAAAGCATGATTGAAAA
TTATTAATAACATAAACCAGGAGCCCATAATTGCAGAAGCTTAGCCTTTAAGCTCAGATATATCT
TCCGTACTTTCCATTAGAAGAATAAGAATCATCTGAC
Done.