Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00568.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2001
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30


Found at i:1921 original size:40 final size:40

Alignment explanation


    Indices: 1877--1956  Score: 160
    Period size: 40  Copynumber: 2.0  Consensus size: 40

       1867 TGCTTGTTGT

                                                    
       1877 ACCTTTCTGGGTATCGGACCTTTTTGCTGTAAATTTCATC
          1 ACCTTTCTGGGTATCGGACCTTTTTGCTGTAAATTTCATC

                                                    
       1917 ACCTTTCTGGGTATCGGACCTTTTTGCTGTAAATTTCATC
          1 ACCTTTCTGGGTATCGGACCTTTTTGCTGTAAATTTCATC

       1957 TCATTTGAAC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.17, C:0.23, G:0.17, T:0.42


Consensus pattern (40 bp):   
ACCTTTCTGGGTATCGGACCTTTTTGCTGTAAATTTCATC
Done.