Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00570.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3048
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Found at i:1766 original size:162 final size:163
Alignment explanation
Indices: 1491--1814 Score: 614
Period size: 162 Copynumber: 2.0 Consensus size: 163
1481 ACACTTATGT
*
1491 TTTTTGAGATGGACCAACCTCTTAAAAGTTACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
1 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
1556 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
66 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
1621 GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
131 GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
* *
1654 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGTATTGGAG-CCT
1 TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
1718 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
66 GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
1783 GATCCAGGAAGTATAACTGCTTCCCCTAATTG
131 GATCCAGGAAGTATAACTGCTTCCCCTAATTG
1815 ATTATAGCTA
Statistics
Matches: 158, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
162 100 0.63
163 58 0.37
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (163 bp):
TTTTTGAGATGGACCAACCTCTTAAAAGTAACTTCCATGTCTGGAAATAGTAGGATCGGAGCCCT
GTGCTTTTCTGCACTAATATTCTACTTCGCATAAAGTAAGCATGCTGTGACTGAGATGTCGTTCT
GATCCAGGAAGTATAACTGCTTCCCCTAATTGG
Done.