Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00275.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 396

Length: 661
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32


Found at i:626 original size:16 final size:16

Alignment explanation


    Indices: 605--655  Score: 59
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        595 TTTAGTTCGA

                          * 
        605 TGTAATATAATAGAAC
          1 TGTAATATAATAGAGC

                            *
        621 TGTAATGA-AATAGAGT
          1 TGTAAT-ATAATAGAGC

                  *         
        637 TGTAATGTAATAGAGC
          1 TGTAATATAATAGAGC

               
        653 TGT
          1 TGT

        656 GATCAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 4
        0.78            0.11        0.11

Matches are distributed among these distances:
  16   28  0.97
  17    1  0.03

ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33


Consensus pattern (16 bp):   
TGTAATATAATAGAGC
Done.