Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02423.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1783
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33


Found at i:477 original size:15 final size:16

Alignment explanation


    Indices: 457--486  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        447 TAAAAAAGGT

                            
        457 GATTTGAAG-CTAATG
          1 GATTTGAAGCCTAATG

                           
        472 GATTTGAAGCCTAAT
          1 GATTTGAAGCCTAAT

        487 CATTCATCTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33


Consensus pattern (16 bp):   
GATTTGAAGCCTAATG
Done.