Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00609.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2157
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:134 original size:21 final size:20

Alignment explanation


    Indices: 92--136  Score: 56
    Period size: 20  Copynumber: 2.3  Consensus size: 20

         82 ATGAAATTTA

                  *    * *      
         92 CTCTCCTTTTTTGCTTCTCT
          1 CTCTCCCTTTTAGATTCTCT

                                
        112 CTCTCCCTTTTAGATTCTC-
          1 CTCTCCCTTTTAGATTCTCT

                  
        131 CTCTCC
          1 CTCTCC

        137 TCAAACCCTA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  19    6  0.27
  20   16  0.73

ACGTcount: A:0.04, C:0.40, G:0.04, T:0.51


Consensus pattern (20 bp):   
CTCTCCCTTTTAGATTCTCT
Done.