Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00610.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4509
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:3868 original size:25 final size:25

Alignment explanation


    Indices: 3840--3904  Score: 69
    Period size: 25  Copynumber: 2.6  Consensus size: 25

       3830 CTATTCCCAG

                       *             
       3840 CTCGTATGAGCTTACCAAATCACAA
          1 CTCGTATGAGCATACCAAATCACAA

                             * * * *  
       3865 CTCGTGA-GAGCATACCGATTTATAA
          1 CTCGT-ATGAGCATACCAAATCACAA

                           
       3890 CTCGTATGAGCATAC
          1 CTCGTATGAGCATAC

       3905 ATGTTTATGA


Statistics
Matches: 33,  Mismatches: 5, Indels: 4
        0.79            0.12        0.10

Matches are distributed among these distances:
  24    1  0.03
  25   31  0.94
  26    1  0.03

ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26


Consensus pattern (25 bp):   
CTCGTATGAGCATACCAAATCACAA
Done.