Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00611.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4922
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:2883 original size:5 final size:6

Alignment explanation


    Indices: 2865--2889  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       2855 GTTTTTGAGC

                                         
       2865 AAGAAA AAGAAA AAGAAA AAGAAA A
          1 AAGAAA AAGAAA AAGAAA AAGAAA A

       2890 CAGAGATTGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (6 bp):   
AAGAAA
Done.