Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00616.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3839
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:1666 original size:84 final size:84

Alignment explanation


    Indices: 1525--1690  Score: 296
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       1515 GAAGGTGAAA

                         *                                                   
       1525 ATGACAGAAGCAATGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                               
       1590 GATCTGAAGTCTGAGGAAG
         66 GATCTGAAGTCTGAGGAAG

                                                             *  *        *   
       1609 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCTGATGGTGACGAGGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                             
       1674 GATCTGAAGTCTGAGGA
         66 GATCTGAAGTCTGAGGA

       1691 TGGCATGGGA


Statistics
Matches: 78,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  84   78  1.00

ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22


Consensus pattern (84 bp):   
ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
GATCTGAAGTCTGAGGAAG
Done.