Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00616.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3836
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26


Found at i:1633 original size:81 final size:81

Alignment explanation


    Indices: 1525--1689  Score: 294
    Period size: 81  Copynumber: 2.0  Consensus size: 81

       1515 GAAGGTGAAA

                         *                                                   
       1525 ATGACAGAAGCAATGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                            
       1590 GATCTGAAGTCTGAGG
         66 GATCTGAAGTCTGAGG

                                                             *  *        *   
       1606 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCTGATGGTGACGAGGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                            
       1671 GATCTGAAGTCTGAGG
         66 GATCTGAAGTCTGAGG

               
       1687 ATG
          1 ATG

       1690 GCATGGGAAA


Statistics
Matches: 80,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  81   80  1.00

ACGTcount: A:0.32, C:0.14, G:0.32, T:0.23


Consensus pattern (81 bp):   
ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
GATCTGAAGTCTGAGG
Done.