Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00634.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840
Length: 1400
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Found at i:544 original size:195 final size:195
Alignment explanation
Indices: 212--604 Score: 777
Period size: 195 Copynumber: 2.0 Consensus size: 195
202 TCCTCCATCC
212 AGGTGGTTGAGGCATTTAAGATTTTGACTTCTGATGATAAAGTGAAAGCCATTTTGGTGAATATA
1 AGGTGGTTGAGGCATTTAAGATTTTGACTTCTGATGATAAAGTGAAAGCCATTTTGGTGAATATA
277 TTTGGGGGAATAATGAAATGTGATGTGATTGCAAGTGGGATCGTCAATGCTGCCAAACAGGTGGC
66 TTTGGGGGAATAATGAAATGTGATGTGATTGCAAGTGGGATCGTCAATGCTGCCAAACAGGTGGC
*
342 CCTAAAAGTTCCTGTGGTAGTCCGTCTTGAACGTACCAATGTTGACCAAGGAAAGCGAATTTTGA
131 CCTAAAAGTTCCTGTGGTAGTCAGTCTTGAACGTACCAATGTTGACCAAGGAAAGCGAATTTTGA
407 AGGTGGTTGAGGCATTTAAGATTTTGACTTCTGATGATAAAGTGAAAGCCATTTTGGTGAATATA
1 AGGTGGTTGAGGCATTTAAGATTTTGACTTCTGATGATAAAGTGAAAGCCATTTTGGTGAATATA
472 TTTGGGGGAATAATGAAATGTGATGTGATTGCAAGTGGGATCGTCAATGCTGCCAAACAGGTGGC
66 TTTGGGGGAATAATGAAATGTGATGTGATTGCAAGTGGGATCGTCAATGCTGCCAAACAGGTGGC
537 CCTAAAAGTTCCTGTGGTAGTCAGTCTTGAACGTACCAATGTTGACCAAGGAAAGCGAATTTTGA
131 CCTAAAAGTTCCTGTGGTAGTCAGTCTTGAACGTACCAATGTTGACCAAGGAAAGCGAATTTTGA
602 AGG
1 AGG
605 AAAGTGGAAT
Statistics
Matches: 197, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
195 197 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (195 bp):
AGGTGGTTGAGGCATTTAAGATTTTGACTTCTGATGATAAAGTGAAAGCCATTTTGGTGAATATA
TTTGGGGGAATAATGAAATGTGATGTGATTGCAAGTGGGATCGTCAATGCTGCCAAACAGGTGGC
CCTAAAAGTTCCTGTGGTAGTCAGTCTTGAACGTACCAATGTTGACCAAGGAAAGCGAATTTTGA
Done.