Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00641.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4059
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:1848 original size:5 final size:5

Alignment explanation


    Indices: 1838--1886  Score: 71
    Period size: 5  Copynumber: 9.8  Consensus size: 5

       1828 TTATCTTAAA

                                                    *     *     *     
       1838 TCAAG TCAAG TCAAG TCAAG TCAAG TCAAG TCAAA TCAAA TCAAA TCAA
          1 TCAAG TCAAG TCAAG TCAAG TCAAG TCAAG TCAAG TCAAG TCAAG TCAA

       1887 TTGTTTTACA


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   5   43  1.00

ACGTcount: A:0.47, C:0.20, G:0.12, T:0.20


Consensus pattern (5 bp):   
TCAAG

Done.