Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00646.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4741
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:2825 original size:6 final size:7

Alignment explanation


    Indices: 2806--2841  Score: 63
    Period size: 7  Copynumber: 5.1  Consensus size: 7

       2796 TTGAACCTTC

                   
       2806 GCTTTTT
          1 GCTTTTT

                   
       2813 GCTTTTT
          1 GCTTTTT

                   
       2820 GCTTTTT
          1 GCTTTTT

                   
       2827 GCTTTTT
          1 GCTTTTT

              *    
       2834 GCCTTTT
          1 GCTTTTT

             
       2841 G
          1 G

       2842 TCTTCTCTTT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.00, C:0.17, G:0.17, T:0.67


Consensus pattern (7 bp):   
GCTTTTT

Done.