Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00648.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5642
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36


Found at i:3521 original size:37 final size:37

Alignment explanation


    Indices: 3480--3557  Score: 138
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       3470 AAACATAGAG

                                                 
       3480 TTTATTTCCAAACCATGTTTTGAAAGGAGTTTTTTCT
          1 TTTATTTCCAAACCATGTTTTGAAAGGAGTTTTTTCT

                   *                *            
       3517 TTTATTTTCAAACCATGTTTTGAATGGAGTTTTTTCT
          1 TTTATTTCCAAACCATGTTTTGAAAGGAGTTTTTTCT

                
       3554 TTTA
          1 TTTA

       3558 CAGTTTTGGT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   39  1.00

ACGTcount: A:0.23, C:0.12, G:0.13, T:0.53


Consensus pattern (37 bp):   
TTTATTTCCAAACCATGTTTTGAAAGGAGTTTTTTCT
Done.