Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00660.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1667
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:1589 original size:129 final size:129

Alignment explanation


    Indices: 1359--1616  Score: 507
    Period size: 129  Copynumber: 2.0  Consensus size: 129

       1349 GCACATGGGA

                                                                             
       1359 GTTGCAGAAGTGGAGCTTGGCCTAGCTAATCTTTTGTACAAGTTTGATTGGGAAATGCCGAATGG
          1 GTTGCAGAAGTGGAGCTTGGCCTAGCTAATCTTTTGTACAAGTTTGATTGGGAAATGCCGAATGG

                                                                            
       1424 GATGAACAGGGAAGACTTAGATTTTGATGCCGTAAATGGTCTCACTACACACAAGAAAAATGCT
         66 GATGAACAGGGAAGACTTAGATTTTGATGCCGTAAATGGTCTCACTACACACAAGAAAAATGCT

                                                                             
       1488 GTTGCAGAAGTGGAGCTTGGCCTAGCTAATCTTTTGTACAAGTTTGATTGGGAAATGCCGAATGG
          1 GTTGCAGAAGTGGAGCTTGGCCTAGCTAATCTTTTGTACAAGTTTGATTGGGAAATGCCGAATGG

                                                  *                         
       1553 GATGAACAGGGAAGACTTAGATTTTGATGCCGTAAATGTTCTCACTACACACAAGAAAAATGCT
         66 GATGAACAGGGAAGACTTAGATTTTGATGCCGTAAATGGTCTCACTACACACAAGAAAAATGCT

       1617 CTTATCCTTC


Statistics
Matches: 128,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 129  128  1.00

ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28


Consensus pattern (129 bp):   
GTTGCAGAAGTGGAGCTTGGCCTAGCTAATCTTTTGTACAAGTTTGATTGGGAAATGCCGAATGG
GATGAACAGGGAAGACTTAGATTTTGATGCCGTAAATGGTCTCACTACACACAAGAAAAATGCT
Done.