Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00677.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4888
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36


Found at i:4012 original size:13 final size:13

Alignment explanation


    Indices: 3994--4018  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       3984 AAATTTCATC

                         
       3994 TGTTTCAAAGCTA
          1 TGTTTCAAAGCTA

                        
       4007 TGTTTCAAAGCT
          1 TGTTTCAAAGCT

       4019 CCCCAACTAT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40


Consensus pattern (13 bp):   
TGTTTCAAAGCTA
Done.