Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00683.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 357

Length: 596
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32


Found at i:177 original size:18 final size:20

Alignment explanation


    Indices: 138--182  Score: 60
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        128 ATTTGTGTCG

                        *       
        138 AAAT-AAAAACAGAATAATA
          1 AAATAAAAAACAAAATAATA

                                
        157 AAATAAAAAACAAAAT-A-A
          1 AAATAAAAAACAAAATAATA

                    
        175 AAATAAAA
          1 AAATAAAA

        183 TAGTCACCTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  18    9  0.38
  19    5  0.21
  20   10  0.42

ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13


Consensus pattern (20 bp):   
AAATAAAAAACAAAATAATA
Done.