Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00686.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4367
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:933 original size:227 final size:227

Alignment explanation


    Indices: 538--1222  Score: 1345
    Period size: 227  Copynumber: 3.0  Consensus size: 227

        528 GATATCGAAA

                                          *                                  
        538 TTGTTAGTATTACAACCTAGGGTCATTTTGTAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC
          1 TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC

                                                                             
        603 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT
         66 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT

                                      *                                      
        668 CAGTTAGCAACGCTAATTGGAAGAAACAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG
        131 CAGTTAGCAACGCTAATTGGAAGAAAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG

                                            
        733 GAAATTTTTATTACTTTAAGGAAATACCCTCT
        196 GAAATTTTTATTACTTTAAGGAAATACCCTCT

                                                                             
        765 TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC
          1 TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC

                                                                             
        830 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT
         66 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT

                                                                             
        895 CAGTTAGCAACGCTAATTGGAAGAAAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG
        131 CAGTTAGCAACGCTAATTGGAAGAAAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG

                                            
        960 GAAATTTTTATTACTTTAAGGAAATACCCTCT
        196 GAAATTTTTATTACTTTAAGGAAATACCCTCT

                                                                             
        992 TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC
          1 TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC

                                                                             
       1057 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT
         66 CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT

                                                                             
       1122 CAGTTAGCAACGCTAATTGGAAG-AAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG
        131 CAGTTAGCAACGCTAATTGGAAGAAAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG

                                            
       1186 GAAATTTTTATTACTTTAAGGAAATACCCTCT
        196 GAAATTTTTATTACTTTAAGGAAATACCCTCT

                 
       1218 TTGTT
          1 TTGTT

       1223 TAGCTTGTTC


Statistics
Matches: 456,  Mismatches: 2, Indels: 1
        0.99            0.00        0.00

Matches are distributed among these distances:
 226   78  0.17
 227  378  0.83

ACGTcount: A:0.32, C:0.15, G:0.21, T:0.31


Consensus pattern (227 bp):   
TTGTTAGTATTACAACCTAGGGTCATTTTGCAAAGCCATGCTCGAATGGTTTACGCCATTAAAAC
CATTAAAGAAATCGGTCTAGAGCCGGCAGAATCTAGGTTTATACATGCTCTTAGGGTTATTTGTT
CAGTTAGCAACGCTAATTGGAAGAAAAAAGTTGAAGCATTTATGAGCCTAGGATGGAGTAAAGAG
GAAATTTTTATTACTTTAAGGAAATACCCTCT
Done.