Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00697.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4738
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39


Found at i:3890 original size:25 final size:26

Alignment explanation


    Indices: 3862--3913  Score: 70
    Period size: 25  Copynumber: 2.0  Consensus size: 26

       3852 CGACTGTGGT

                        *  *          
       3862 TTATGAATTGATGTTTA-TTGAATAC
          1 TTATGAATTGATATTCATTTGAATAC

                *                     
       3887 TTATTAATTGATATTCATTTGAATAC
          1 TTATGAATTGATATTCATTTGAATAC

             
       3913 T
          1 T

       3914 AATTCCAAGT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  25   14  0.61
  26    9  0.39

ACGTcount: A:0.33, C:0.06, G:0.12, T:0.50


Consensus pattern (26 bp):   
TTATGAATTGATATTCATTTGAATAC
Done.