Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00705.C10

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4895
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31


Found at i:583 original size:93 final size:93

Alignment explanation


    Indices: 442--796  Score: 512
    Period size: 93  Copynumber: 3.8  Consensus size: 93

        432 AATGACCCAG

                          *           *                *                     
        442 TACAAAATGAAGATGGTGCTTGTGGGTTAAATGCTTTGCCTATGATTTCCATCCCAAGAGATGTG
          1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG

                                        
        507 GAGAATGTTGGAGAAAAGACTGCCTTGA
         66 GAGAATGTTGGAGAAAAGACTGCCTTGA

                        *                                                 *  
        535 TACAAAATGAAGGTAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATATG
          1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG

                      *             *   
        600 GAGAATGTTGCAGAAAAGACTGCCCTGA
         66 GAGAATGTTGGAGAAAAGACTGCCTTGA

                         *                               *     *   *         
        628 TACAAAATGAAGAGAGTGCTTGTGGGGTAAATGCTTTGCCTATAACTTCCAACCCGAGAGATGTG
          1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG

                               *        
        693 GAGAATGTTGGAGAAAAGATTGCCTTGA
         66 GAGAATGTTGGAGAAAAGACTGCCTTGA

                  * *        *      **        *        *         *          *
        721 TACAAACTAAAGATAGTTCTTGTGCAGTAAATGCCTTGCCTATGATTTCCATCTCAAGAGATGTA
          1 TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG

                  *    
        786 GAGAATTTTGG
         66 GAGAATGTTGG

        797 TGCACAATCA


Statistics
Matches: 232,  Mismatches: 30, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  93  232  1.00

ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28


Consensus pattern (93 bp):   
TACAAAATGAAGATAGTGCTTGTGGGGTAAATGCTTTGCCTATAATTTCCATCCCAAGAGATGTG
GAGAATGTTGGAGAAAAGACTGCCTTGA

Done.