Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00710.N136

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4938
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:1299 original size:19 final size:21

Alignment explanation


    Indices: 1271--1318  Score: 64
    Period size: 20  Copynumber: 2.4  Consensus size: 21

       1261 TTATTATTTA

                                 
       1271 TTTTAGTTTTGATTCTAA-AT
          1 TTTTAGTTTTGATTCTAATAT

                      *   *      
       1291 TTTTA-TTTTTATTTTAATAT
          1 TTTTAGTTTTGATTCTAATAT

                    
       1311 TTTTAGTT
          1 TTTTAGTT

       1319 AAAATTTTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  19   10  0.42
  20   12  0.50
  21    2  0.08

ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69


Consensus pattern (21 bp):   
TTTTAGTTTTGATTCTAATAT

Found at i:3891 original size:3 final size:3

Alignment explanation


    Indices: 3883--3928  Score: 92
    Period size: 3  Copynumber: 15.3  Consensus size: 3

       3873 TTTGATTATA

                                                                         
       3883 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A

       3929 CTAAACCTTA


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   43  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
AAG

Done.