Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00712.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4697
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28


Found at i:591 original size:18 final size:18

Alignment explanation


    Indices: 568--660  Score: 141
    Period size: 18  Copynumber: 5.2  Consensus size: 18

        558 ACCGTTTACG

                              
        568 GTACTATTCACGTATACA
          1 GTACTATTCACGTATACA

                              
        586 GTACTATTCACGTATACA
          1 GTACTATTCACGTATACA

                              
        604 GTACTATTCACGTATACA
          1 GTACTATTCACGTATACA

             *      *   *    *
        622 GCACTATTTACGAATACG
          1 GTACTATTCACGTATACA

                 *            
        640 GTACTGTTCACGTATACA
          1 GTACTATTCACGTATACA

               
        658 GTA
          1 GTA

        661 GTTGGGATTG


Statistics
Matches: 66,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   66  1.00

ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32


Consensus pattern (18 bp):   
GTACTATTCACGTATACA

Done.