Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00717.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1677
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:1615 original size:43 final size:43

Alignment explanation


    Indices: 1567--1660  Score: 154
    Period size: 43  Copynumber: 2.2  Consensus size: 43

       1557 ATTCTAGAAA

                                                        
       1567 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
          1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC

                          *             *              
       1610 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
          1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC

                    
       1653 TATTTTCT
          1 TATTTTCT

       1661 CAATTAGGAT


Statistics
Matches: 48,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  43   47  0.98
  44    1  0.02

ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52


Consensus pattern (43 bp):   
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Done.