Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00736.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1351
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33


Found at i:229 original size:26 final size:26

Alignment explanation


    Indices: 192--327  Score: 229
    Period size: 26  Copynumber: 5.2  Consensus size: 26

        182 TGATACAAAT

                   *                   
        192 TGATAATAGGTTAGGTAAATG-TTCAA
          1 TGATAATGGGTTAGGTAAATGTTTC-A

                                      
        218 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                   *               *  
        244 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        270 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        296 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        322 TGATAA
          1 TGATAA

        328 GAATATCATG


Statistics
Matches: 104,  Mismatches: 5, Indels: 2
        0.94            0.05        0.02

Matches are distributed among these distances:
  26  101  0.97
  27    3  0.03

ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.