Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g00747.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785
Length: 1309
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Found at i:521 original size:25 final size:27
Alignment explanation
Indices: 479--531 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
469 AATTACTGTT
479 TACCCCTAGGTGTAAAATT-ACCGAAA
1 TACCCCTAGGTGTAAAATTGACCGAAA
* *
505 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTGTAAAATTGACCGAAA
531 T
1 T
532 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (27 bp):
TACCCCTAGGTGTAAAATTGACCGAAA
Found at i:1024 original size:137 final size:136
Alignment explanation
Indices: 779--1064 Score: 545
Period size: 137 Copynumber: 2.1 Consensus size: 136
769 GAGTAGTCTC
779 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
844 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
909 CTGTTA
131 CTGTTA
915 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
980 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
1045 ACTGTTA
130 ACTGTTA
**
1052 CCTGAATGGGCTT
1 CCCAAATGGGCTT
1065 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 20 0.14
137 127 0.86
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Done.