Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00789.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34


Found at i:1103 original size:16 final size:16

Alignment explanation


    Indices: 1082--1116  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1072 TTTCATTTTC

                          * 
       1082 GTTAACGAATGTAGGT
          1 GTTAACGAATGTAGAT

                            
       1098 GTTAACGAATGTAGAT
          1 GTTAACGAATGTAGAT

               
       1114 GTT
          1 GTT

       1117 GTGTTTAATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34


Consensus pattern (16 bp):   
GTTAACGAATGTAGAT
Done.