Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00798.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2381
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:1091 original size:12 final size:12

Alignment explanation


    Indices: 1074--1099  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1064 TTTGCAGCAT

                        
       1074 TGTGCTTAGTAA
          1 TGTGCTTAGTAA

                        
       1086 TGTGCTTAGTAA
          1 TGTGCTTAGTAA

              
       1098 TG
          1 TG

       1100 GGTGGACGGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42


Consensus pattern (12 bp):   
TGTGCTTAGTAA
Done.