Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00810.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2524
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:789 original size:23 final size:23

Alignment explanation


    Indices: 759--817  Score: 73
    Period size: 23  Copynumber: 2.6  Consensus size: 23

        749 ACCCTAAGCA

                       **       *  
        759 TGCTAGAGCAGTTGACAAAGTCG
          1 TGCTAGAGCAGCAGACAAAGACG

                    *        *     
        782 TGCTAGAGTAGCAGACAGAGACG
          1 TGCTAGAGCAGCAGACAAAGACG

                         
        805 TGCTAGAGCAGCA
          1 TGCTAGAGCAGCA

        818 AGCTATAAAT


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  23   30  1.00

ACGTcount: A:0.32, C:0.19, G:0.32, T:0.17


Consensus pattern (23 bp):   
TGCTAGAGCAGCAGACAAAGACG

Found at i:2144 original size:21 final size:20

Alignment explanation


    Indices: 2120--2159  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       2110 ATGTTAATAA

                *                
       2120 TAAATTAATACAAAATTAACT
          1 TAAAATAATA-AAAATTAACT

                       *       
       2141 TAAAATAATAATAATTAAC
          1 TAAAATAATAAAAATTAAC

       2160 AAATCTTATA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    8  0.47
  21    9  0.53

ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33


Consensus pattern (20 bp):   
TAAAATAATAAAAATTAACT
Done.