Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00810.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:769 original size:21 final size:20

Alignment explanation


    Indices: 745--784  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        735 ATGTTAATAA

                *                
        745 TAAATTAATACAAAATTAACT
          1 TAAAATAATA-AAAATTAACT

                       *       
        766 TAAAATAATAATAATTAAC
          1 TAAAATAATAAAAATTAAC

        785 AAATCTTATA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    8  0.47
  21    9  0.53

ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33


Consensus pattern (20 bp):   
TAAAATAATAAAAATTAACT
Done.