Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00816.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1956
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:1731 original size:24 final size:24

Alignment explanation


    Indices: 1699--1747  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1689 GTTCGTCCCC

                                    
       1699 GGAGGGTGTTGGATGCTATATCGT
          1 GGAGGGTGTTGGATGCTATATCGT

                                    
       1723 GGAGGGTGTTGGATGCTATATCGT
          1 GGAGGGTGTTGGATGCTATATCGT

             
       1747 G
          1 G

       1748 TTAAACTGCG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.16, C:0.08, G:0.43, T:0.33


Consensus pattern (24 bp):   
GGAGGGTGTTGGATGCTATATCGT
Done.