Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00819.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2893
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33


Found at i:102 original size:18 final size:18

Alignment explanation


    Indices: 29--116  Score: 50
    Period size: 18  Copynumber: 4.7  Consensus size: 18

         19 CTGTTCTCTA

                           *  
         29 CTTCTCTTTTTCTTTTTC
          1 CTTCTCTTTTTCTTTCTC

            *                * * 
         47 TTTCTTCTTTTTCTCTCACCC
          1 CTTC-TCTTTTTCT-T-TCTC

             *    *  *  *     
         68 CCTCTCCTTCTCCTTCTC
          1 CTTCTCTTTTTCTTTCTC

                             *
         86 CTTCTCTTTTTCTTTCTT
          1 CTTCTCTTTTTCTTTCTC

            *       *    
        104 TTTCTCTTCTTCT
          1 CTTCTCTTTTTCT

        117 CCTTCCTTCT


Statistics
Matches: 49,  Mismatches: 18, Indels: 6
        0.67            0.25        0.08

Matches are distributed among these distances:
  18   29  0.59
  19   10  0.20
  20    7  0.14
  21    3  0.06

ACGTcount: A:0.01, C:0.36, G:0.00, T:0.62


Consensus pattern (18 bp):   
CTTCTCTTTTTCTTTCTC
Done.