Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00825.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26


Found at i:437 original size:24 final size:24

Alignment explanation


    Indices: 410--624  Score: 342
    Period size: 24  Copynumber: 9.0  Consensus size: 24

        400 TGGTACTCCA

                              *      
        410 CCATCAT-CTGGAGGTGGTAGTCCC
          1 CCATCATAC-GGAGGTGGCAGTCCC

                 *  *     *         
        434 CCATCGTATGGAGGAGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                 *        *         
        458 CCATCGTACGGAGGAGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                                    
        482 CCATCATACGGAGGTGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                                    
        506 CCATCATACGGAGGTGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                                    
        530 CCATCATACGGAGGTGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                                    
        554 CCATCATACGGAGGTGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                    *               
        578 CCATCATATGGAGGTGGCAGTCCC
          1 CCATCATACGGAGGTGGCAGTCCC

                    *              
        602 CCATCATATGGAGGTGGCAGTCC
          1 CCATCATACGGAGGTGGCAGTCC

        625 AACTACTCCT


Statistics
Matches: 182,  Mismatches: 8, Indels: 2
        0.95            0.04        0.01

Matches are distributed among these distances:
  24  182  1.00

ACGTcount: A:0.20, C:0.31, G:0.30, T:0.18


Consensus pattern (24 bp):   
CCATCATACGGAGGTGGCAGTCCC

Done.