Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00835.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29


Found at i:986 original size:51 final size:51

Alignment explanation


    Indices: 897--1019  Score: 176
    Period size: 51  Copynumber: 2.4  Consensus size: 51

        887 ACCCTCTTAC

                    *                     *  *                  
        897 ATGGAGTGAATAATGTTGCTGATGAATATGTTGGTGATTTTGCAACAT-TAG
          1 ATGGAGTGGATAATGTTGCTGATGAATATGCTGATGATTTTGCAACATCT-G

                *                                              
        948 ATGGTGTGGATAATGTTGCTGATGAATATGCTGATGATTTTGCAACATCTG
          1 ATGGAGTGGATAATGTTGCTGATGAATATGCTGATGATTTTGCAACATCTG

              *  *               
        999 ATAGACTGGATAATGTTGCTG
          1 ATGGAGTGGATAATGTTGCTG

       1020 CTGCACGTAC


Statistics
Matches: 64,  Mismatches: 7, Indels: 2
        0.88            0.10        0.03

Matches are distributed among these distances:
  51   63  0.98
  52    1  0.02

ACGTcount: A:0.28, C:0.08, G:0.28, T:0.37


Consensus pattern (51 bp):   
ATGGAGTGGATAATGTTGCTGATGAATATGCTGATGATTTTGCAACATCTG
Done.