Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00841.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3665
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2885 original size:21 final size:21

Alignment explanation


    Indices: 2859--2901  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2849 TTGATGACTT

                                 
       2859 TTCTTTCATTGTAAGCATTGA
          1 TTCTTTCATTGTAAGCATTGA

                                 
       2880 TTCTTTCATTGTAAGCATTGA
          1 TTCTTTCATTGTAAGCATTGA

             
       2901 T
          1 T

       2902 CCTCACAGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49


Consensus pattern (21 bp):   
TTCTTTCATTGTAAGCATTGA
Done.