Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00841.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3926
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35


Found at i:3146 original size:21 final size:21

Alignment explanation


    Indices: 3120--3162  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3110 TTGATGACTT

                                 
       3120 TTCTTTCATTGTAAGCATTGA
          1 TTCTTTCATTGTAAGCATTGA

                                 
       3141 TTCTTTCATTGTAAGCATTGA
          1 TTCTTTCATTGTAAGCATTGA

             
       3162 T
          1 T

       3163 CCTCACAGTG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.14, T:0.49


Consensus pattern (21 bp):   
TTCTTTCATTGTAAGCATTGA
Done.