Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g00843.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2234
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34


Found at i:720 original size:14 final size:15

Alignment explanation


    Indices: 701--729  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

        691 TCAAAGCGCG

                           
        701 AAGAAGAAA-AAGAA
          1 AAGAAGAAAGAAGAA

                           
        715 AAGAAGAAAGAAGAA
          1 AAGAAGAAAGAAGAA

        730 GAGATTGGAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    9  0.64
  15    5  0.36

ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00


Consensus pattern (15 bp):   
AAGAAGAAAGAAGAA

Found at i:786 original size:18 final size:21

Alignment explanation


    Indices: 748--786  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 21

        738 ATTCCAAAGG

                                 
        748 CAAAGAAGAAAATGAGGAAGA
          1 CAAAGAAGAAAATGAGGAAGA

                                 
        769 CAAA-AAGAAAA-G-GGAAGA
          1 CAAAGAAGAAAATGAGGAAGA

        787 ACCAGGTCAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    6  0.33
  19    1  0.06
  20    7  0.39
  21    4  0.22

ACGTcount: A:0.64, C:0.05, G:0.28, T:0.03


Consensus pattern (21 bp):   
CAAAGAAGAAAATGAGGAAGA
Done.